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Shuangbin Xu
A PhD student of Bioinformatics, I am broadly interested in metagenomics, bioinformatics, machine learning, data mining and visualization.
I have leaded and contributed to developing some R packages, including MicrobiotaProcess, ggtreeExtra, ggstar, ggbreak, ggtree, treeio, tidytree and ggmsa, to help related researchers to explore and understand their data.
Education
PhD., Bioinformaitcs
Southern Medical University
ChuangZhou, CN
current - 2019
- Thesis: The development of computational methods for studying microbiome: focus on the data mining and visualization
M.S.,Aquatic Biology
JiMei University
Xiamen, CN
2017 - 2014
- Thesis: 大黄鱼环状RNA挖掘与功能分析
B.S., Aquaculture
Northwest A&F University
XianYang, CN
2014 - 2010
Work Experience
Senior Bioinformatics Engineer
Xiamen TreatGut Company
XiaMen, CN
2019 - 2017
- Helping build the workflow of microbiome data analysis
- Helping the mining of related microbiome data
- Helping develop the related testing products
Bioinformatics Engineer Intern
Frasergen Genetic Information Company
Wuhan, CN
2016
- Helping the deployment and using with slurm and pbs scheduling systems of the software (PacBio diploid assembler: Falcon, canu, etc) of the TianHe and company’s Supercomputer platform
Publications
- Citation = 297
- H-index = 8
- I10-index = 7
Conference proceedings
Analysis and visualization of microbiome datasets using MicrobiotaProcess
The 10th BiocAsia2020 Conference, 2020
Virtual Conference
2020